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Results for "Memory"

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• • BioStar@biostar

  

  Comment on "Benchmarking Perl Module !"

  Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This can be done using the Perl Benchm...

  408 days ago

• • Rahul Nayak@rahul

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...Options=string - Pass string to the command used to submit jobs to the grid. Can be used to set maximum run time limits. Should NOT be used to set memory limits; Canu will do that for...

  2092 days ago

• • Jit@jit.aber

  

  Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"

  ...ndex - If false, only one gapped spaced index will be used in region selection. If true, two such indexes (with different shapes) will be used (2x memory-hungry but more powerful for...

  2285 days ago

• • Jit@jit.aber

  

  Comment on "QUAST: quality assessment tool for genome assemblies"

  You can also try LAZER, it produces the same evaluation as Quast but is 5.6 times faster and use half the memory http://www.csd.uwo.ca/~ilie/LASER/

  2691 days ago

• • Jit@jit.aber

  

  Comment on "Platanus"

  ...all FLOAT may be suitable (Ex. -d 0.3). -m INT : Memory limit (GB, >= 1, default 16) Programs attempt to make memory usage smaller than INT(GB)....

  2792 days ago

• • Shreya Ganguli@shreya

  

  Comment on "R and Bioconductor Tutorial"

  Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences. http://www.bioconductor.org/packages/2.12/bioc/html/Biostrings.html

  3896 days ago