Results for "Mers"
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Kraken: ultrafast metagenomic sequence classification using exact alignments
...forcing researchers to use faster abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-mers, Kraken achieves classificati...2882 days ago
- ...ters. For more information, refer to the manual. KmerGenie can be used to determine the best k-mer size, minimum abundance of correct k-mers, and genome size estimation f...
2718 days ago
QuorUM: An Error Corrector for Illumina Reads
...ated because they result in a large number of low-count erroneous k-mers in the reads. However, there...und the novel idea of minimizing the number of distinct erroneous k-mers in the output reads and prese...2383 days ago
- ...sp;search Heuristics for read alignment and mapping &mdash mapping DNA-seq and RNA-seq reads Genome assembly &mdash k-mers, De Brujin graph construction...
2362 days ago
- ...en refined a few times in fermi, fermi2 and now in BFC. In the k-mer counting phase, BFC uses a blocked bloom filter to filter out most singleton k-mers and keeps the rest in a hash...
2179 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...reates a matrix of the number of K-mers found given a GC count and a...tool. Creates a matrix of shared K-mers between two (or three) sequen...ces a k-mer hash containing only k-mers within specified coverage and...lot shows the amount of distinct K-mers absent, as well as the copy n...1995 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
...long read is then corrected independently by identifying low frequency k-mers in the long read and replacing them with the closest matching high frequency k-mers in the implicit de Bruijn gra...2108 days ago
LoRMA: A tool for correcting sequencing errors in long reads
...thod consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected re...2081 days ago
- ...ord Nanopore reads. Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10). More at&nb...
1586 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
...It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the frequency of k-mers in sequencing data and predic...1572 days ago
