Results for "Metagenome"
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Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is available in and GCC >= 4.8 and OSX >= 10....Tags: Mash, fast, genome, metagenome, distance, estimation, MinHash
2332 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of ...Tags: CAT/BAT, tool, taxonomic, classification, contigs, metagenome, assembled, genomes, MAGs
1445 days ago
- Research Interest: Bioinformatics High-throughput and high-dimensional data analysis Microbiome data analysis (Main focus) Next-generation and third-generation sequencing data analysis for genomics Gene expression data analysis Machine learning for biological data Biomarker...
Tags: Kanthida, Kusonmano, metagenome, bioinformatics, big data
1100 days ago
Environmental Genomics Group SciLifeLab/KTH Stockholm
Useful Metagenomics resourcesTags: metagenome, Genome, Resource, Pipeline
518 days ago
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