Results for "Methods"
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GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of...2938 days ago
- segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furth...
2926 days ago
- ...om high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect me...
2902 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying on pr...2889 days ago
- ...sis and visualization platform for ‘omics data. Please find the methods paper here: https://peerj.com...ibuted to its development. Here is the acknowledgements section of our methods paper An analysis and visual...
2889 days ago
- ...tatistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize func...
2889 days ago
- ...ferred proteins, but can also serve as an independent quality control test for potential horizontal transfer candidates identified by alternative methods, especially those based on nu...
2883 days ago
- ...vering and genotyping structural variations using sequencing data. The methods are designed to detect shared...across and within a set of sequenced genomes to detect variation. The methods are adaptive and support hete...
2807 days ago
- ...package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat elemen...
2826 days ago
- ...GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA sequences) methods will be employed in order to...
2818 days ago
