Results for "Model"
Top-level pages
..., and techniques such as the three-dimensional modeling of biomolecules and biolog...building sequence profiles or Hidden Markov Models to perform more sensitive ho...be predicted with an accuracy above 70 %. 3D models can be obtained most easily...3951 days ago
- ...for finding genes in microbial DNA, especially the genomes of bacteria and archaea.Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the codin...
3946 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...on of SOLiD reads in colorspace] Repeat-aware modeling and correction of short re...:139-40 2010 PubMedCentral Two-stage Poisson model for testing RNA-seq data. Aue...using next-generation RAD sequencing of a non-model organism. Baxter et al., PLoS...3783 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...nversion under various demographic models. http://users-birc.au.dk/mai...pop EASYPOP is an individual based model intended to simulate datasets...l.htmlGAMETES Genetic Architecture Model Emulator for Testing and Eval...under structure-based substitution models http://code.google.com/p/pro...3741 days ago
List of In-silico Binding Site Prediction Tools
...by solvent accessible surface model (Richards' surface) and by molecular surface model (Connolly's surface), all cal...function prediction using 3D models of proteins. ProBiS: http:/...ted ligand docking or in situ modeling. Comparing the shape simil...3748 days ago
Next generation sequencing in R or bioconductor environment
...s of proteins in ChIP-Seq experiments. Its algorithm uses hidden Markov models (HMM) and Bayesian statistic...ons bound by transcription factors. PICS identifies enriched regions by modeling local concentrations of di...3628 days ago
Commercial and public next-gen-seq (NGS) software
...ughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes...s available as part of the Vancouver Short Read Analysis Package MACS - Model-based Analysis for ChIP-Seq....3522 days ago
Software packages for next gen sequence analysis
...ughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes...available as part of the Vancouver Short Read Analysis Package * MACS - Model-based Analysis for ChIP-Seq....3246 days ago
Binding Site Prediction in Protein !
...The server utilizes protein-structure prediction to provide structural models of the binding site. Ligands bound to structures are superimposed onto the model and use to predict the bindin...2206 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...lfSingle Description: uses likelihood-based model for variant calling, starts f...lly probabilisticallys instead of using ad-hoc modeling; effects are integrated at...e 75 Output: covariance matrix for regression models mtSet Description: C...2912 days ago
