2604 days ago
2602 days ago
ChromHMM: Chromatin state discovery and characterization
...o discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of e...2588 days ago
eQuant : energy-based quality assessment of protein
...tein structures are of varying quality. Especially, in-silico modeled structures are prone to con...y assessment of single proteins, which utilizes a coarse-grained energy model. The overall quality is calcu...2521 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...fication of non-coding RNAs. It uses SVM-based model for the discrimination betwee...g and ncRNAs and RandomForest-based prediction model for the classification of ncR...es were used for the development of prediction model. The standalone version...2499 days ago
LIBSVM -- A Library for Support Vector Machines
...ormulations Efficient multi-class classification Cross validation for model selection Probability estima...nvironments: RapidMiner, PCP, and LIONsolver. Automatic model selection which can generate...2483 days ago
Musket: a multistage k-mer spectrum based corrector
...t Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior par...2357 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...ent-based analysis and generates a set of read profiles serving as the input to the next step, the simulation stage. The simulation stage uses the model built in the previous step to...2345 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...ains and chromatin loops in the genome. It then generates a physical 3D model which represents the plausibl...ysical structure with extensive genome annotation by juxtaposing the 3D model with diverse genomic assay ou...2343 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
..., allowing to assemble human-sized genomes on commodity clusters in under a day. The process pipeline implements a highly transparent and portable model of job control and monitoring...2342 days ago