Results for "NGOPT Assembler"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative gen...49-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which assembled a huma...t and memory efficient string graph-based sequence assembler. Gonnella & Kurtz, BMC Bi...3774 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo...ly By Short Sequences. ABySS is a de novo sequence assembler that is designed for very sho...gun microreads. ALLPATHS is a whole genome shotgun assembler that can generate high qualit...3514 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de no...ly By Short Sequences. ABySS is a de novo sequence assembler that is designed for very sho...gun microreads. ALLPATHS is a whole genome shotgun assembler that can generate high qualit...3237 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different...ion: algorithm searches graphs produced by de novo assembler Cortex; c++ source code for S...hisms in transformed De Bruijn graphs using Cortex assembler.” Input: Output:...2904 days ago
Genome Assembly Tools and Software - PART1 !!
...amp; Analysis DNA Sequence Assembler is revolutionary bioinformati...BinPacker is a novel de novo assembler by modeling the transcriptome...SATRAP 0.2 – SOLiD Assembler TRAnslation Program A co...ut. StriDe – novel Assembler The StriDe Assembler integ...2681 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoal...on technique MinHash Software (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ON...2366 days ago
- When you have both Illumina and Nanopore d...This produces: SPAdes genome assembler v3.10.1 Usage: /usr/local/...rection (without assembling) --only-assembler runs only assembling (...-k 31,51,71 \ --only-assembler \ -1 miseq.1.fastq...
2346 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (ty...bly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a con...2325 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint r...t/software/tips.html Omega | Overlap-graph de novo Assembler for Metagenomics https://ome...d Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler https://github.com/abiswas-o...2236 days ago
Bioinformatics tools for genome assembly !
...ptember 2021: SPAdes: An assembler specifically designed for sin...s. ABySS: A parallelized assembler for large genomes that uses d...nomes. MaSuRCA: A hybrid assembler that combines data from multi...mes. Unicycler: A hybrid assembler that combines short and long...281 days ago
