Results for "NGOPT Assembler"
Bookmarks
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which was released on May 2...sion r1994), used by some modules of Celera Assembler, is included. This dist...acificBiosciences/FALCON/tree/v0.1.3 Falcon assembler].Full documentation can be fo...2594 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high q...rmation. It is able to close gaps left open by the assembler in a draft genome, even when using the same data sets as used by the original assembler. iCORN, that enables errors...2562 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software...mammalian. CABOG is an extension of the Celera Assembler software that was originally...is one of many software programs called genome assemblers. These programs exist to ove...2559 days ago
- DISCO is a multi threaded and multiprocess distributed memory overlap-layout-consensus (OLC) metagenome assembler. Disco was developed as a scalable assembler to assemble large metagenomes...
2503 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (ty...bly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a con...2363 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to opt...2363 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
While the number of sequenced diploid genomes have been...limitation, we developed the first de Bruijn graph assembler, dipSPAdes, for HP genomes that significantly improves on the state-of-the-art assemblers for HP diploid genomes.2340 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high...2340 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Elec...a complete de novo assembly tool. Unlike other state-of-the-art assemblers, Ra does not have an er...2333 days ago
RGFA: powerful and convenient handling of assembly graphs
RGFA, an implementation of the proposed GFA specification in Ruby. It allows the use..., to finish the assembly of a sequence, using information not available to the assembler. We illustrate a use case, in...1579 days ago
