Results for "NGS Data Analysis"
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...amples into a single report. NGSQC NGSQC: cross-platform quality analysis pipeline for deep sequenc...t generation sequencing (NGS) data, consisting of both raw reads qua...supports Ion Torrent and 454 data. Trim galore! Trim_galore&n...2158 days ago
Comment on "Virtual Bioinformatics Online Tutorial"
...UK Cambridge Bioinformatics core facility HarvardX Biomedical Data Science Open Online Training...CBioinformatics Bioinformatics Crash Course Next-Gen Sequence Analysis Workshop (2013) R and NGS tutorial Bioinformatics Resources...2341 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...ibrary stores with which you can do anything. for NGS , python is highly recommende...made recently in python. R is good for downstream analysis like doing statistical analysis, create fancy graphs(ggplot2), work with rnaseq data (Deseq,degseq,etc), pathway analy...3552 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
Well, if you are doing NGS analysis, C and C++ is a good option. It is a lower...& Python. But, due to the huge amount of data content in NGS, the efficiency of your code c...utation speed, and hardware requirement. For NGS computations I suggest you to u...3552 days ago
Comment on "R and Bioconductor Tutorial"
R and Bioconductor for NGS data analysis http://master.bioconductor.org/help/course-materials/2012/CSC2012/Bioconductor-tutorial.pdf http://manuals.bioinformatics.ucr.edu/home/ht-seq3667 days ago
Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Q...pattern searches [1] Biostrings – Reading sequences in...e genomes and BioC annotation data [3] DEGSeq – Identify...expressed genes from RNA-Seq data. [4] IRanges – infrast...matics/sequencing-information/ngs-analysis-with-r/ http://bioconductor....3691 days ago
Comment on "Five unique traits of effective computational biologist"
...rted in Gene Expression Microarray Analysis. PLoS Comput Biol5(...Quick Guide to Large-Scale Genomic Data Mining.PLoS Comput Biol6(5):...ut Biol8(9): e1002632 [link] Giddings MC (2008) On the Process of Be...erbino D, Schneider MV. (2013) The NGS WikiBook: a dynamic collaborative...3850 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
ANGUS is a site built around the 2010 course on Analyzing Next-Generation Sequencing Data. It contains a number of detailed tutorials on mapping, assembly, mRNAseq, ChIP-seq, and resequencing analysis. Enjoy! http://ged.msu.edu/angus/index.html3926 days ago
Comment on "R and Bioconductor Tutorial"
I found one R package SeqinR very handy in statistical computing of NGS data. SeqinR 2.0-1: a contributed package to the project for statistical computing devoted to biological sequences retrieval and analysis Link :http://seqinr.r-forge.r-project.org/seqinr_2_0-1.pdf3927 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
My favourite tutorial page for NGS based data analysis http://www.csc.fi/english/csc/courses/archive/ngs_workshop3927 days ago
