Results for "NGS data analysis"
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Linux command line exercises for NGS data processing
...is tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experi...es as it is a language in itself and is used more often to manipulate NGS data as compared to the other command...2894 days ago
- SAMtools: Primer / Tutorial by Ethan Cera...tool used in next-generation sequence analysis. This primer provides an...those new to next-generation sequence analysis. The primer is also designed...tools, and no other tools, and sample data sets are provided. Terms in bold...
2893 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform....ce accurate results, A5-miseq requires Illumina data with certain characteristics....nt assembler if a tool like FastQC reports your data qua...
2837 days ago
- Recent studies of the human genom...y elements. These interaction datasets are important resources t...logies, making sense of these datasets demands integrative and e...ork theory approaches for the analysis of chromatin interaction...onal genomics and interaction datasets, 3) querying network componen...
2888 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. P...bundance estimation programs, which only classify small subsets of metagenomic data. Us...2888 days ago
- CSBB is a command line based bioi...s suite to analyze biological data acquired through varied avenu...ted by performing down-stream analysis tasks while eliminating t...e normalization on expression data or convert genome wide gene e...res when comparing expression data from different platforms. More a...
2887 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 1...r browsing, blasting, probing, and downloading. The data and tools presented by greeng...user, you can use greengenes to keep your own local database...
2887 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multipl...Whole-genome alignment. PREFAB >Protein Reference Alignment Database. MSA benchmark collectio...2881 days ago
- In machine learning, computers apply statistical learning techniques to automatically identify patterns in data. These techniques can be used...accurate predictions. Keep scrolling. Using a data set...
2884 days ago
- Records in 4DGenome are compiled through comprehensive literature curation of experimentally-derived and...76 computationally-predicted interactions in 5 organisms. Experimental data cover both high throughput datasets...
2882 days ago
