Best book Titles for Learning Bionformatics
...ell, 2003, O'Reilly Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darryl L...S Pub. Co. Algorithms on Strings, Trees, and Sequences: Computer Sc...J. Heyer, 2002, Benjamin/Cummings Genomes, Terence A. Brown, 2002,...3920 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Al...3915 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...esign Statistical design and analysis of RNA sequencing data. Auer & Doerge, Genetics...package called FSTpoolit for analysis of the resulting sequence rea...Sansaloni et al., BMC Proceedings 5(Suppl 7):P54, 2011 Full Text Hi...toring and searching sequence data in the cloud. OConnor et al, BMC...3782 days ago
List of bioinformatics open source projects/software.
...-based workflow framework for data analysis Armadillo workflow platf...ttps://github.com/biorails a data management system designed to sup...cess to more than 150 genomic analysis tools GeWorkbench http://wi...xploration of diverse genomic data IntAct http://www.ebi.ac.uk/int...3759 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...more flexible and useful settings. If you need models with more...osition of typical metagenome data sets http://ab.inf.uni-tuebingen....ividual-based program for the analysis of quantitative traits with e...odel for population viability analysis (PVA). http://www.vortex9.org...3739 days ago
List of In-silico Binding Site Prediction Tools
...query protein to members of a database of protein 3D structures...n structure visualization and analysis but has been used more often...structure and their both endings are opened to the surrounding solv...ween surfaces from coordinate data supplied in a PDB file. MSPocket...3746 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and...tively and handle huge amount of genomic/biological data with an ease. The field of bi...For knowledge about Linux and their importance amongst bio...3708 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle...ode and they do one thing really well. These things include changing line spacing,...scii)'#converts ascii values into character strings.perl...3630 days ago
Next generation sequencing in R or bioconductor environment
...and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from...functions provided by Biostrings form the basis for many other sequence analysis packages. Documentation...; Additional tools for SNP analysis: snpMatrix BSgenome...3627 days ago
Commercial and public next-gen-seq (NGS) software
...bsp;- Commercial software for NGS, microarray, and qPCR data analysis. Streamlined analysis wor...e genomes, and carry out post-analysis. ZOOM is developed to be high...pecifically optimized for the analysis of large numbers (millions) o...ser/Alignment Viewer/Assembly Database EagleView - An information-ri...3521 days ago