Results for "NGS data analysis"
Top-level pages
Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 Information: This sc...n.txt) Note: You can download GTF files from http://www.ensembl.org/info/data/ftp...2108 days ago
- ...rmat for storing raw sequence data. For example, the FASTA file...f base calls, quality of mappings, and probabilities associated...des multiple elements of meta-data regarding a read and its alig...niques of nucleotide sequence analysis that increase the range, comp...
2871 days ago
Genome Assembly Tools and Software - PART1 !!
...ory saving and convenience of data inquiry, high-throughput short reads data is always initially formatte...novo assembly of large scale NGS data by conducting family-specic g...with the rest of your typical NGS workflow. Metassembler 1.5 &n...2688 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actio...Larger example: NOTE: NEVER ANY DATA DECLARATIONS IN PSEUDOCODE...ut totals: Number of consecs, ascendings, and sorries. Stop Some Ke...) in your pseudocode. Do not include data dec...2661 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The...erefore the fragment size distribution can be learned empirically for each WGS data set...2524 days ago
Awesome perl frameworks, libraries and software - PART 1
...and validate 'CouponCode' strings eserte/bbbike - BBBike...plication that serves KeePass database entries on a web frontend...eration Sequencing (NGS) data analysis masukomi/jsonpath-perl ...or High Throughput Sequencing analysis gbarr/perl-libnet - per...2491 days ago
- It is often necessary to import sample textbook data into R before you start worki...system. > library(gdata) ...k = loadWorkbook("mydata.xls") > df ...ocumentation > mydata = read.spss("myfile...
2491 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...m, resulting from a cladistic analysis, which depicts a hypothet...and (by reference to sequence data banks) for discovery of identitie...s. ingroup -- In a cladistic analysis, the set of taxa which are hy...haracters used in a cladistic analysis, either original or derived....2464 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ference sequences and RNA-seq data (k-mer based) Software (C++) http://www.cs.cmu.edu/~ckingsf/software/sailfish/ Salmon...rge.net/projects/ksnp/files/ NGS-MC Phylogeny of species based on...omic assignment in metagenome analysis by exact k-mer search; L...2373 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good o...equired for MDA (single-cell) data --meta this...quired for metagenomic sample data --rna this...bling Advanced options: --dataset <filename>...
2353 days ago
