2130 days ago
Comment on "Virtual Bioinformatics Online Tutorial"
...UK Cambridge Bioinformatics core facility HarvardX Biomedical Data Science Open Online Training...CBioinformatics Bioinformatics Crash Course Next-Gen Sequence Analysis Workshop (2013) R and NGS tutorial Bioinformatics Resources...2313 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...ibrary stores with which you can do anything. for NGS , python is highly recommende...made recently in python. R is good for downstream analysis like doing statistical analysis, create fancy graphs(ggplot2), work with rnaseq data (Deseq,degseq,etc), pathway analy...3524 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
Well, if you are doing NGS analysis, C and C++ is a good option. It is a lower...& Python. But, due to the huge amount of data content in NGS, the efficiency of your code c...utation speed, and hardware requirement. For NGS computations I suggest you to u...3524 days ago
Comment on "R and Bioconductor Tutorial"
R and Bioconductor for NGS data analysis http://master.bioconductor.org/help/course-materials/2012/CSC2012/Bioconductor-tutorial.pdf http://manuals.bioinformatics.ucr.edu/home/ht-seq3639 days ago
Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Q...pattern searches [1] Biostrings – Reading sequences in...e genomes and BioC annotation data [3] DEGSeq – Identify...expressed genes from RNA-Seq data. [4] IRanges – infrast...matics/sequencing-information/ngs-analysis-with-r/ http://bioconductor....3663 days ago
Comment on "Five unique traits of effective computational biologist"
...rted in Gene Expression Microarray Analysis. PLoS Comput Biol5(...Quick Guide to Large-Scale Genomic Data Mining.PLoS Comput Biol6(5):...ut Biol8(9): e1002632 [link] Giddings MC (2008) On the Process of Be...erbino D, Schneider MV. (2013) The NGS WikiBook: a dynamic collaborative...3822 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
ANGUS is a site built around the 2010 course on Analyzing Next-Generation Sequencing Data. It contains a number of detailed tutorials on mapping, assembly, mRNAseq, ChIP-seq, and resequencing analysis. Enjoy! http://ged.msu.edu/angus/index.html3898 days ago
Comment on "R and Bioconductor Tutorial"
I found one R package SeqinR very handy in statistical computing of NGS data. SeqinR 2.0-1: a contributed package to the project for statistical computing devoted to biological sequences retrieval and analysis Link :http://seqinr.r-forge.r-project.org/seqinr_2_0-1.pdf3899 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
My favourite tutorial page for NGS based data analysis http://www.csc.fi/english/csc/courses/archive/ngs_workshop3899 days ago