Results for "NR"
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RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq different...3651 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
...f reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). More at https://gatb.inria.fr/2926 days ago
RCircos: an R package for Circos 2D track plots
...large-scale multi-sample genomic research data. It can also serve as a base tool to generate complex Circos images. More at https://bitbucket.org/henryhzhang/rcircos/src2904 days ago
- ...uences. By default, Kaiju uses either the available complete genomes from NCBI RefSeq or the microbial subset of the non-redundant protein database nr used by NCBI BLAST, optionall...
2866 days ago
- ...e significance threshold in an EWAS study, and analyses whether there is enrichment for overlap of putative functional elements compared to matched background DMPs. It assesses enrichment on a per cell type bas...
2744 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite o...
2737 days ago
Method in Comparative genomics !!
...ory motifs. These include most previously known regulatory motifs as well as several noteworthy novel motifs. The majority of discovered motifs are enriched in functionally related...2731 days ago
- ...nown motifs (Tomtom), finding preferred spacings between motifs (SpaMo), predicting the biological roles of motifs (GOMo), measuring the positional enrichment of sequences for known...
2688 days ago
ChromHMM: Chromatin state discovery and characterization
...hromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale funct...2571 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method fo...ne of the tools in this domain called Enrichr. Enrichr currently contains a larg...ries. New features have been added to Enrichr including the ability to...le at: http://amp.pharm.mssm.edu/Enrichr. https://academic.oup.co...2563 days ago
