Results for "New Genome"
Top-level pages
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exac...2315 days ago
List of visualization tools for genome alignments
Genome browsers are useful not onl...need publication ready figure of genomes. Following are the list of genome alignment visualization tools...ation information of a reference genome http://bioinformatics.zj.cn/...and visualizing sequenced human genomes http://www.svaproject.org...2285 days ago
Computational resources for TE discovery and TE detection
...ransposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotat...easing interest in developing new methods for their computational...rge.net/ REPuter http://www.genomes.de/ RetroMap http://www.bu...2275 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool th...rview of the workflow which includes Transcriptome/ Genome alignment, Differential expre...tering, Venn diagrams, CVA, UMI support and elastic genome browser used in RNA-Seq workf...2265 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual m...DNA must enter the host nucleus, integrate into the genome, and in more complex organism...potential for genetic incompatibility with the host genome and mismatch between the nich...851 days ago
Some useful Bioinformatics links
Reference-free prediction of rea...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...oter_tutorial//Tutorial/CustomGenomes/CustomGenomes.html https://...2243 days ago
Tools to Predict the Impact of Missense Variants !
...generalize best, that is, correctly predict the pathogenic character of new variants. Study of 10 tools...ucleotide variants as well as insertion/deletions variants in the human genome”2204 days ago
- ...les tix python-tk-dbgThe following NEW packages will be installed: b...5 ttf-bitstream-vera0 upgraded, 73 newly installed, 0 to remove and...29:18 2018] Reduction...#file name genome size contigs heterozygous siz...2018] Final reduction...#file name genome size contigs heterozygous siz...
2191 days ago
Gap filling or Contigs extensions tools !
...ads" or "Toward almost closed genomes with GapFiller". There ar...ook at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...rested in assembling the full genome, just the 100 kb part you're...ds that align extending these new paired-end reads. c. Construct a new assembly C' from C and the new r...2166 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn map...r example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference genome) sequence id 3. piden...2140 days ago
