2580 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC ...2338 days ago
DendroPy: a Python library for phylogenetic computing
...tion of phylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in a range of formats, such as NEXUS, NEWICK, NeXML, Phylip, FASTA, etc. A...2202 days ago
UPhO: Scripts for homology and orthology assessment from genomic sequences.
...explanations on its usage, installation and dependencies. Type UPhO.py -h for help. The only input requierement for UPhO is a tree (or trees) in Newick format in which the leaves ar...1936 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
...iles, variant meta distribution as specified in META files (see Manual) or specific variant information as specified in VAR files (see Manual) and NEWICK files for specifying clonal p...1399 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...displayed in this browser are from Ensembl. Summary statistics of Genomicus version 105.01: (view species tree in pdf or newick) Number of extant specie...794 days ago