Results for "Next Generation Sequence Analysis"
Bookmarks
RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was...onella serotypes. RATT is able to transfer any entries present on a reference sequence...3019 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assembli...BAM files of reads aligned to the input FASTA file. Pilon uses read alignment analysis to identify inconsistencies b...
3018 days ago
- Spines Spines is a collection of software tools, developed and used by the Ver...es for efficient data manipulation (mostly genomic sequences, alignments, variation etc.)...sets for various analyses. It also features three sequence...
3018 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from al...ads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features...
3014 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene...
3007 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such r...et that facilitates comprehensive and reproducible analysis of chordate genome data. Ense...omics infrastructure is extensively reused for the analysis of non-vertebrate species by...2998 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
2997 days ago
- Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/b...
2997 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align bi...icate the reliability of each aligned column. Use sequence quality data properly. Compa...A to proteins, with frameshifts. Compare PSSMs to sequence...
2988 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jeru...NA-seq reads. Trinity partitions the sequence data into many individual de...les the RNA-seq data into the unique sequences of transcripts, often genera...en gene (or sets of genes that share sequence...2975 days ago
