PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2960 days ago
2960 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome...2960 days ago
2951 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independentl...head first into more advanced analysis tools such as HOMER. Setti...rom public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads t...pt discovery and differential analysis with Cufflinks Differential...2940 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such...ipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence...2923 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of t...2940 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...2938 days ago
2776 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces...istic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER...score and E-value evaluated according to the sequence...2934 days ago