Results for "Next Generation Sequence Analysis"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...Full Text Compression of DNA sequence reads in FASTQ format. Deorowic...Central [requires a reference sequence] HiTEC: accurate error correct...of large genomes using second-generation sequencing. Schatz et al, Gen...o transcriptome assembly from next-generation sequencing data. Surget-Gro...3788 days ago
List of bioinformatics open source projects/software.
...d workflow framework for data analysis Armadillo workflow platform T...omkappa/ PromKappa (Promoter analysis by Kappa) software program used for promoter pattern generation and promoter analysis. MeV...a software package to analyse next-generation resequencing data3765 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...late the evolution of protein sequences under the constraints of the i...rch.nhgri.nih.gov/gasp/GemSIM Next generation sequencing read simulator h...ividual-based program for the analysis of quantitative traits with e...odel for population viability analysis (PVA). http://www.vortex9.org...3745 days ago
List of In-silico Binding Site Prediction Tools
...so available enabling further analysis. PROSURFER: http://163.43.14...ding residues from amino acid sequences is important for the automat...n structure visualization and analysis but has been used more often...tion. Numerous structure- and sequence-based methods have been devel...3752 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around ma...rs-for.html http://bioexpressblog.wordpress.com/2013/04/05/split-multi-fasta-sequence...3636 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows...ced environment for efficient sequence management and analysis in R. It contains many speed...data. Documentation ChIP-Seq Analysis Packages Bioconductor provid...3633 days ago
Commercial and public next-gen-seq (NGS) software
...ix - Integrated Solutions for Next Generation Sequencing data analysis. JMP Genomics - Next gen...enome Analyser - Software for Next Generation sequence assembly of Illumina, Roche FLX...or Unix. gnumap - The Genomic Next-generation Universal MAPper (gnumap) i...3527 days ago
- Since few years miRNA has shown to play important role in t...d tools related with miRNA: miRNA Sequencing data analysis : http://tools.genxpro.n...ww.illumina.com/applications/epigenetics/small_rna_analysis.ilmn More: http://www.bioco...
3504 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iO...app that allows for the opening and analysis of DNA sequencing files - ab1...plement", "Jump to", "Copy and Paste sequences", fast and end scrolling, "C...app that allows for the opening and analysis of DNA sequencing files - ab1...3550 days ago
- Pathway Analysis is usually performed with aim to en...mechanisms pursue by genes. Pathway Analysis is not only limited to what b...croarrayCourse/Lectures09/Pathway%20Analysis.pdf http://gettinggeneticsdo...help/search/index.html?q=Enrichment+analysis+
3504 days ago
