Software packages for next gen sequence analysis
...using the Smith-Waterman algorithm. Features a number of support tools. Support for...ange of Refseq RNA or NCBI genome builds for a number of organisms. Web Portal. OS...ecifically optimized for the analysis of large numbers (millions) of high-throughpu...3257 days ago
2728 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...er-Father-Child Trio analysis, DNA Copy number including allele specific copy number and Loss of Heterozygosity (L...putative indel events containing large numbers of false positives. The stat...ity and ploidy to compute absolute copy number and mutation multiplicitie; r...2923 days ago
2928 days ago
Tools for Searching Repeats And Palindromic Sequences
...Retrotransposons ( LINES ) Currently up to 50% of the human genome is repetitive in nature and as improvements are made in detection methods this number is expected to increase. On...2225 days ago
2888 days ago
2883 days ago
Genome Assembly Tools and Software - PART1 !!
...l sequence insertions, translocations and copy numbers REPdenovo – A too...ovide the average coverage (indicates the copy number) for each constructed repeats...k. Then, for each value of k, it predicts the number of distinct genomic k-mers in...2700 days ago
Source Code and Pseudo Code !!
...d the iteration is satisfied by a number of statements, such as the "w...counter endif endwhile print the number of passes print the number of...if end While Print out totals: Number of consecs, ascendings, and s...TCH statements, etc. a consistent number of spaces, such as four. Alte...2673 days ago
Perl Special Vars Quick Reference
...et caching code. ${^UTF8LOCALE} Indicates whether UTF8 locale was detected at startup. IO and Separators $. Current line number (or record number) of most recent filehandle....2658 days ago