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• • Poonam Mahapatra@poonam

  

  #Extract #Chromosome #Number And Start Position #Reads: samtools view bamfile.bam|awk '{print $3 "\t" $4 "\t" $4+length($10)-1}' > newfile.tab

  2881 days ago

• • Jit@jit.aber

  

  Number of thread in Linux: echo $(( `ps axms | wc -l` - 1)) #Thread #Info #Linux

  2802 days ago

• • Jit@jit.aber

  

  Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt #Split #Break #Line #Ubuntu #Linux #Tricks

  2795 days ago

• • Jit@jit.aber

  

  Rename/number the multi-fasta file in ascending order. $ awk '/^>/{print ">" ++i; next}{print}' < Mix_assembly.fasta > Mix_assembly2.fasta #awk #oneliner

  2553 days ago

• • Rahul Nayak@rahul

  

  Count the number of bases in fasta file. grep -v ">" file.fasta | wc | awk '{print $3-$1}' #Fasta #Count #Bases

  2522 days ago

• • Aaryan Lokwani@aaryan

  

  #Scientific #converter https://www.rapidtables.com/convert/number/scientific-notation-converter.html

  2159 days ago

• • Rahul Nayak@rahul

  

  Add number in fasta header $ awk '/^>/{$0=$0"_"(++i)}1' infile.fa #fasta #header #add #number #count

  1977 days ago

• • Rahul Nayak@rahul

  

  Understanding accession number https://www.ncbi.nlm.nih.gov/Sequin/acc.html #Accession #NCBI

  1712 days ago

• • Jit@jit.aber

  

  sort the string which combined with string + numeric using bash script. $ sort -V #Sort #sort #number #string

  1213 days ago

• • LEGE@lege

  

  Count number of fasta sequence $ awk '/^>/ { f = !a[$0]++ } f' aaaa.fa > bbbb.fa #count #fasta #oneliner

  990 days ago

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