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MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction...2618 days ago
- Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscope
2982 days ago
Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This incre...3017 days ago
Ensembl comparative genomics resources
...and have a consistent informatics infrastructure and data presentation across all supported species. Speci...here is relevant to these projects. The consistency of the annotation across species and the focus on ver...2987 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their gen...
3008 days ago
- ...RATT is able to transfer any entries present on a reference sequence, such as the systematic id or an annotator's notes; such information would be lost in a de novo annotation. Mo...
3008 days ago
- CrossMap is a program for convenient conversion of genome...mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats i...luding SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is designed to liftover g...
3007 days ago
- ...tute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignme...zed program for high-sensitivity, genome-wide synteny; Papaya, an all-purpose alignment tool for less dive...
3006 days ago
- ...in yeast genomes are difficult to infer, and in most species they are still unkno...hromatin conformation assay Hi-C has been re-purposed for diverse applications, i...data to infer centromere locations for each chromosome in 14 different yeast spec...
3003 days ago
- ...solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to gen...
3003 days ago
