LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for c...sp;de novo genome assembly. Further information about LACHESIS, including source code, documentation and a use...2181 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-...idences between the content of different pools as a source of contiguity information for...ps. Further information about fragScaff, including source code, is available at:https:/...2181 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
This software is provided ``as is” without warranty of any kind. In no event s...damage resulting from the use of this software. The program package, including source codes, executables, and this...2181 days ago
2180 days ago
LAMSA: fast split read alignment with long approximate matches
...ally faster than the state-of-the-art long read aligners; mean-while, it also has good ability to handle various categories of SVs. LAMSA is open source and free for non-commercial u...2180 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
bpRNA, a novel annotation tool capable of parsing RNA structures, including complex...he Graph perl module. Several additional scripts for analysis are included. The source code is available at http://g...2172 days ago
WhatsHap: fast and accurate read-based phasing
...rts multi-sample VCFs. It produces standard-compliant VCF output by default If desired, get output that is compatible with ReadBackedPhasing Open Source (MIT license)...2167 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...easily to multi-gigabase genomes and deep-coverage sequencing. Quickly open and view data files on your c...for large installations with thousands of tracks. Very light server resource requirements. In fact, JBrows...2135 days ago
1534 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH),...alling and SNV classification using targeted short read sequencing.” Source Code for Biology and Medicine...2094 days ago