Results for "Open Source Codes"
Bookmarks
EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both...2726 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop compu...assemblers (e.g. Velvet). Download Minia 2.0.7 Linux 64-bits binaries (Sourc...
2718 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual...ython and requires MUMmer and BLAST+ to be installed on the local machine. The sourc...2711 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The sourc...2711 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages. The pipeline...2707 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial an...of the organism, as it learns all the properties it needs to on its own. Open Source: Prodigal sourc...2697 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements...the included tools (ex hal2maf) in the submodules/ directory structure, first sourc...
2678 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, M...5.8.0 or later. PDL::IO::Storable is required in scripts running PDL. SOURCE AND FURTHER READING The sourc...2664 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short an...MAP version associated with a Torrent Suite release below. Get the latest sourc...2603 days ago
- The official documentation of the Perl 6 programming language is now published! Besides...to debug Perl 6 programs, and how to hack on Perl 6 source code. The Perl 6 homepage offers a comprehensive list of Perl 6 resourc...
2662 days ago
