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A simple tutorial for a complex ComplexHeatmap
...ze) require(digest) require(cluster) If all load successfully, proceed to Part 3. Otherwise, go through the following code chunks in order to ensure that each package i...1142 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
...dies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs...3238 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using c...2964 days ago
REAPR: a universal tool for genome assembly evaluation
...ary (at least 1000bp). Additionally, if a short insert Illumina library is also available, REAPR can combine this with the large insert library in order to score each base of the ass...2964 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...alise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For visualisa...2944 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...a standard software pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their functions. Recently, in order to make RAST a more useful re...2943 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...eny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features,...2927 days ago
- ...do not want duplicates to be removed. Clicking on submit then returns a table of your inputs matched against all the outputs selected in the exact order as entered. Results can be li...
2907 days ago
- ...rough the steps necessary for running _A5-miseq_. Point to note: There are many situations where A5-miseq is not the right tool for the job. In order to produce accurate results,...
2830 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2852 days ago
