BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overl...2516 days ago
2509 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by remo...mum cost flow analysis of the overlap graph and then merged to contigs an...he computing time of existing overlap-layout-consensus assemblers...2488 days ago
2488 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It us...ssification of ncRNAs into different classes. The structural information based graph properties were used for the...2481 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep pa...eraculous relies on an efficient and conservative traversal of the subgraph of the k-mer (deBruijn) graph of oligonucleotides with uniq...2368 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016...s as input alignments files of long reads to sparse short seeds, and outputs a graph and scaffold structures. Tuli...2352 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...as input and outputs an assembly graph in the GFA format. Di...hes the assembly, including reads overlapping, in ~10 minutes with 16 C...inimap can be used as a read overlapper, even though it is probabl...; (cd miniasm && make) # Overlap minimap/minimap -Sw5 -L100...2348 days ago
2346 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can...arches can be performed within the Bandage graphical user interface and the hi...2341 days ago