odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of a...ms that allow the use of such graphs in bioinformatic analyses....in the global array of nodes. Graphs built from biological data s...tially ordered regions of the graph, most deltas will require onl...835 days ago
Collection of Graph Visualization tools !
Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences...478 days ago
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Severus: a somatic structural variation (SV) caller for long reads
Severus is a somatic structural variation (SV) caller for long reads (both PacBio and...ne calls. Severus takes advantage of long-read phasing and uses the breakpoint graph framework to model complex ch...47 days ago
ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overl...9 days ago