Results for "PSI Blast"
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CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of...d by existing tools. This tool is implemented in Python and requires MUMmer and BLAST+ to be installed on the local...2695 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circu...erence sequence and other sequences as concentric rings. BRIG will perform all BLAST comparisons and file parsing...
2632 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to loca...
2631 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete gen...ccounts for the distance between neighboring genes on each DNA molecule and the BLAST E-value score between homolog...2631 days ago
- SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web. More at http://sequenceserver.com.
2610 days ago
- This website and accompaning documents are intended as a tool to help researchers d...u/denovo.html http://sfg.stanford.edu/sequencing.html http://sfg.stanford.edu/BLAST.html http://sfg.stanford.edu...
2587 days ago
- DIAMOND is a sequence aligner for protein and translate...and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitabl...ding contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. More...
2562 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, effi...rs from tedious manual annotation of these sequences. The program utilizes tBLASTn and BLASTn algorithms to map genes from...2530 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone...The Basic Local Alignment Search Tool (BLAST) has revolutionized the field...techniques, the utility of traditional BLAST implementations is limited. C...webchem.ncbr.muni.cz/Platform/App/CrocoBLAST2473 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifica...2348 days ago
