Results for "PU"
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A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot3023 days ago
Alignment of closely related whole genomes/scaffolds
...g volume of data requires tools that can quickly compare multiple whole-genome sequences, millions of base pairs in length, to aid in the study of populations, pan-genomes, and geno...3027 days ago
Ensembl comparative genomics resources
...mparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whol...2997 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their gen...
3018 days ago
- ...ing large event detection Pilon requires as input a FASTA file of the genome a...one or more BAM files of reads aligned to the input FASTA file. Pilon uses read.... It then attempts to make improvements to the input genome, including: Single...
3017 days ago
- ...Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequenc...lelized program for high-sensitivity, genome-wide synteny; Papaya, an all-purpose alignment tool for less...
3016 days ago
- ...till unknown. Recently, the chromatin conformation assay Hi-C has been re-purposed for diverse application...h a limited amount of Hi-C sequencing. Paper:http://www.ncbi.nlm.nih.gov/pubmed/25940625 More at http://...
3013 days ago
- ...larger structural features of chromosomes, their correlation to genomic and epigenomic features, and on comparative studies. It uses simple input and output formats and can therefore ea...
3013 days ago
- ...ox package includes scripts for setting up databases of annotation, collecting annotated features, collecting genomic data relative to features, manipulating and analyzing data, and...
3006 days ago
- ...nerated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeogr...
3001 days ago
