Results for "Paired end sequencing"
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SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, pri...in bold are also explained in the glossary at the end of the document....2887 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads f...INDEL) polymorphisms, and simulate reads with uniform substitution sequencing errors. It does not generate INDEL sequencing errors, but this can be partl...
2887 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will...s dubious. You have been warned! Datasets consisting solely of unpaired reads are not currently supported...
2831 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly...
2883 days ago
- FQC is software that facilitates quality control of FASTQ files by carrying out a...metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The dashboard groups sa...
1286 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox...s you to work with hundreds of samples containing hundreds of millions of sequencing reads. Blast-like analysis ca...
2855 days ago
- ...iscovering and genotyping structural variations using sequencing data. The methods are des...port heterogeneous data sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end reads. A minimum of 20 to 30 genomes...
2812 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for b...2641 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo a...
2825 days ago
- ... assembled contigs, paired-end and/or mate pairs sequencing libraries and return...ing of genome fragments using paired-end and/or mate-pairs reads gap...or Sanger) and library types (paired-end, mate pairs, fosmids) modular: ever...
2817 days ago
