Results for "Paired end sequencing"
Top-level pages
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common...tion specific tasks. e.g. analysis of microarray experiments and Next-Gen sequencing (bioconductor: including Bios...3375 days ago
Software packages for next gen sequence analysis
...s, emerged by next-generation sequencing technology, back to the refer...eed about 20-25X coverage and paired reads. Developed by Daniel Zerbin...es from the 454 Life Sciences sequencing machines. It was designed to...me Sciences Centre. MySQL backend and Perl-CGI web-based frontend/Linu...3256 days ago
- Reformat is a member of the BBMap/BBTools package. It is a multipu...nger) ascii-64 (old Illumina) paired files interleaved files It i...reak pairing, if the input is paired. Quality trimming (either or both ends) Quality filtering Fixed-len...in=x.fq out=y.fa Interleave paired reads: reformat.sh in1=x1....
2728 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ption: identifies indels from paired-end reads Input: BAM (aligned in SAMtoo...les from the same patient; dependent on R, Git, cmake, Boost and compi...rdquo;can accept a variety of sequencing inputs and configurations&rdq...line variants in tumor-normal paired data Input: BAM index files (nor...2922 days ago
- SLURM is a queue management system and stands for Simple Linux Utility for Resource Management. SLURM was develo...ceed the amount of memory that you request. Accounting Tools SLURM has a back end databa...
2928 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered...and is read starting from the 3' (three prime) end or the 5' (five prime) end of the strand. Recent resear..., when either strand is read from the 5' prime end the se...2225 days ago
- Linux Commands Cheat Sheet File System ls — list items in current dire...ve cursor to beginning of line ctrl+f — move cursor to end of lin...
2888 days ago
- ...ch base; usually generated by sequencing machines. genotype likel...ion of G to A. mate-pair: in paired-end sequencing, both ends of a single DNA or RNA fragm...is covered by 30 independent sequencing reads. Increased read-depth t...t is sequenced. Contrast with paired-end sequencing. VCF Format: Vari...
2883 days ago
Genome Assembly Tools and Software - PART1 !!
...d CoverAge, CO-alignment, and Paired-end Read LinkAge COCACOLA: a gene...bly Program Opera (Optimal Paired-End Read Assembler) is a sequence...sh; de novo, parallel, paired-end Sequence Assembler ABySS (Assembl...be used to characterize novel sequencing targets. SGA 0.10.14 &nd...2699 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of t...d. All statements showing "dependency" are to be indented. Thes...else Print "failed" endif 2. Set total to z...es add one to student counter endif endwhile print the number o...tc. with careful indentation tend to fos...2673 days ago
