Results for "Perl"
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VCFtools contains a Perl API (Vcf.pm) and a number of Perl scripts that can be used to perform common tasks with VCF files such as file validation, file merging, intersecting, complements, etc. The Perl tools support all versions of the VCF specification (3.2, 3.3, 4.0, 4.1 and 4.2), nevertheless...Tags: VCFtools, Perl, API, Vcf.pm, Perl, scripts, VCF, validation, file, merging, intersecting, complements
2112 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best way is using perl threads and forks. Knowing how these threads and forks work is very important before implementing them. Getting to know how these work would be really useful before read...Tags: Parallel, Processing, Perl, Bioinformatics, Programming
2094 days ago
- The benchmark module is a great tool to know the time the code takes to run. The output is usually in terms of CPU time. This module provides us with a way to optimize our code. With the advent of petascale computing and other multicore processor it is becoming a neccesity to know about the CPU t...
Tags: Benchmark, Perl, Module, Script, Time
2094 days ago
- An increasing number of studies are mapping protein binding and nucleotide modifications sites throughout the transcriptome. Often, these sites cluster in certain regions of the transcript, giving clues to their function. Hence, it is informative to summarize where in the transcript these sites o...
Tags: MetaPlotR, Perl, R, pipeline, plotting, metagenes, nucleotide, modifications, transcriptomic, sites
2022 days ago
How to fix "Makefile:975: recipe for target 'test_dynamic' failed" error
t/elink_llinks.t (Wstat: 512 Tests: 0 Failed: 0) Non-zero exit status: 2 Parse errors: Bad plan. You planned 84 tests but ran 0.t/elink_ncheck.t (Wstat: 512 Tests: 0 Failed: 0) Non-zero exit status: 2 Parse errors: Bad plan. You planned 58 tests but ran 0.t/elink_neighbor.t (Wstat: 512 Tests: 0 F...Tags: Perl, Module, Install
1723 days ago
