Results for "Perl Modules"
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This is a collection of libraries and high-quality end-user scripts for bioinformatic...n of data from multiple data files. They rely on BioPerl SeqFeature libraries and rela...data format conversion. More at http://cpansearch.perl.or...2996 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you thr...Browse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl an...
2996 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, r...transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and But...2964 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a...
2766 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome...assessment and control of high-throughput sequencing data). It contains bash/perl/R...
2881 days ago
- The Genome Assembly Evaluation Metrics and Reporting (G...) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single p...
2881 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as gi...pulate NGS data as compared to the other command line tools such as grep, sed, perl et...2872 days ago
- ...biological experiments. CSBB is implemented in Perl, while it also leverages the...use of R and python in background for specific modules. Major focus of CSBB is to al...Windows platforms. Currently CSBB provides 13 modules focused on analytical tasks l...
2865 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome sca...scaffolds scaffold constitutes the central scaffold-builder and comprises two modules: i) the interative_scaffold_...
2851 days ago
- This tutorial includes resources for learning more about PacBio data and bioinforma...s content suitable for both beginners and experts. Below are links to training modules (webinars and PowerPoint pres...
2625 days ago
