Results for "Perl Modules"
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Redundans pipeline assists an assembly of heterozygous genomes.Program takes a...sembly or scaffolding more details. The pipeline consists of three steps/modules: redundancy reduction: det...2801 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdf...type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST...he kmer, cvCut, expCov, and other flags To Run: perl fa...2702 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages. The pi...2692 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl ba...2692 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for...ious constraints, including quality, length, uncalled bases, and user-supplied modules. http://neufeldserver.uwater...
2657 days ago
Many-Core Engine (MCE) for Perl example
...stream to the next available worker. CORE MODULES Three modules make up the core engine fo...ger, :worker, and :getter. REQUIREMENTS Perl 5.8.0 or later. PDL::IO::Storabl...itHub. https://github.com/marioroy/mce-perl https://github.com/marioroy...2649 days ago
- The official documentation of the Perl 6 programming language is now publish...of built-in subroutines and methods. Perl 6 ProgramsA collection of documents describing how to run the Perl 6 executable program and othe...d Perl 5 language can be found on the Perl 5...
2647 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived...sted on version 10.2.4 only) and Microsoft Windows platforms and is written in Perl/Tk...
2632 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data....
2591 days ago
- JSON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read an...grammers of the C-family of languages, including C, C++, C#, Java, JavaScript, Perl, P...
2586 days ago
