Results for "Perl in a day"
Bookmarks
This is a collection of libraries and high-quality end-user scripts for bioinformatic a...on of data from multiple data files. They rely on BioPerl SeqFeature libraries and rela...d data format conversion. More at http://cpansearch.per...3012 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you thro...GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPer...
3012 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create...
2781 days ago
- High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes grows by the day, quality assessment of the re...
2931 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome a...y assessment and control of high-throughput sequencing data). It contains bash/per...
2897 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giv...ipulate NGS data as compared to the other command line tools such as grep, sed, per...2888 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Per...
2881 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set...
2719 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdfl...type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST...the kmer, cvCut, expCov, and other flags To Run: per...2718 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004)...2708 days ago
