Results for "Phylogenetic"
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iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a nov...2648 days ago
- ...d visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp&nbs...
2648 days ago
FSA: Fast Statistical Alignment
...equence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like N...2642 days ago
- ...tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nu...e genome, it is evident that it cannot replace other alignment-based phylogenetic methods such as OrthoANI...
2555 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...teins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures to i...2506 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written in 2009 to fill...2495 days ago
iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic trees. Explore your trees directly in the browser, and annotate them with vari...2480 days ago
Mesquite: A modular system for evolutionary analysis
...ize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Becaus...2480 days ago
- FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures. As with most of my programs, it was written for my own needs so...
2479 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...h sequences for ancestral genomes at the internal nodes of the phylogenetic tree. The phylogenetic tree may be also specified co...ifferent gene content. It also can reconstruct most plausible phylogenetic tree based on the rearrangeme...2473 days ago
