Results for "Phylogenetic"
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RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in population and commu...2460 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...nced metazoan genomes. Moreover, Genomicus stores and displays the predicted ancestral genome structure in all the ancestral species within the phylogenetic range of interest. All the d...2357 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, suc...2346 days ago
Harvest: a suite of core-genome alignment and visualization tools
...d visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp&nbs...2337 days ago
- Sept. 20, 2017 Version 3.1 released. Major upgrade. Version 3.1 fixes the problems with SNP annotation that arose when NCBI discontinued use of GI numbers. Please read car...
2337 days ago
TeachEnG: Teaching Engine for Genomics
...lp students and researchers understand key bioinformatics concepts. The current version includes interactive modules for sequence alignment and phylogenetic tree reconstruction algorithm...2332 days ago
MeDuSa: a multi-draft based scaffolder
.... In contrast to currently used scaffolders, it does not require either prior knowledge on the microrganisms dataset under analysis (e.g. their phylogenetic relationships) or the availab...2269 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...tive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the input...2285 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...o more accurately order and orient the contigs of a draft genome. In practical usage, our Multi-CAR does not require prior knowledge concerning phylogenetic relationships among the draft...2249 days ago
Mesquite: A modular system for evolutionary analysis
...ize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Becaus...2242 days ago
