Results for "Pipeline"
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RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...cterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic featu...ar version of RAST that enables researchers to build custom annotation pipelines. RASTtk offers a choice of s...2923 days ago
- ...converting a variety of read types to Binary Alignment Map (BAM) format, allowing a single input format to be entered into GAEMR’s analysis pipeline, hence enabling the generatio...
2875 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-mi...
2810 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2810 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on programs from four widely used packages: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd),...
2799 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art...
1944 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input&nbs... resulting from genome assembly or scaffolding more details. The pipeline consists of three steps/modul...
2796 days ago
CGView - Circular Genome Viewer
...GView is useful for producing high-quality genome maps for use in publications and websites, or as a visualization tool in a sequence annotation pipeline. Users can interact with the...2778 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly...
2775 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep sequencing data. In its pr...
2763 days ago
