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...the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output fr...2818 days ago
AutoDock Vina: an open-source program for doing molecular docking.
AutoDock Vina is an open-source program for doing molecular docking. It was designed and implemented by Dr. Oleg Trott in the Molecular Graphics Lab at The Scripps Rese...1421 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input assembled contigs, paired-end and/or mate pairs sequencing libraries and retu...
2802 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to...2794 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wall...
2772 days ago
- ...available computational resources as well as programming acumen. Since heatmaps ar...browsers. In addition to memory requirements, programming skills and knowledge have...owser. shinyheatmap is a low memory footprint program, making it particularly well-...
2752 days ago
- ...nt-offspring relationships when phasing genotypes, please use version 4.0. If you use Beagle 4.1 in a published analysis, please report the program version and cite the appropri...
2745 days ago
- IMPUTE2 is a computer program for phasing observed genotypes an...t people use just a couple of the program's basic functions, but we hav...u should begin by downloading the program from here. You will need...hing or would like to know if the program can perform a function that i...
2745 days ago
- This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's Laboratory of B...
2745 days ago
- ...well as specialized tool sets for various analyses. It also features three sequence alignment packages: Satsuma, a highly parallelized program for high-sensitivity, genome-...
2714 days ago
