Results for "Program"
Bookmarks
Laj: viewing and manipulating the output from pairwise alignment programs
...a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can displ...sites containing additional information about particular regions. The program is written in Java in order t...2620 days ago
- CLgenomics is a standalone desktop software specifically designed for bacterial genome analysis. This program has a powerful multi-genome browser, which enables rapid and responsive e...
2618 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. War...2615 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hyb...2580 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffolding...
2555 days ago
ANGES: reconstructing ANcestral GEnomeS maps
...ontains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10,...2542 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing clus...2537 days ago
AVID: A Global Alignment Program
...s we have developed for the alignment comparisons, as well as the AVID program, are publicly available. See...te References section for AVID Web address and Web addresses for other programs discussed in this paper.2536 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can pro...2536 days ago
Genome Annotation Transfer Utility (GATU)
...te the new strain using a previously-annotated strain of SARS CoV. This saves researchers from tedious manual annotation of these sequences. The program utilizes tBLASTn and BLASTn a...2531 days ago
