Results for "Programming with Perl"
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CSBB is a command line based bioinformatics suite to analyze biological data acquired throug...of biological experiments. CSBB is implemented in Perl...analysis tasks while eliminating the need to write programming code. CSBB is currentl...2881 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various nex...e computational resources as well as programming acumen. Since heatmaps are us...In addition to memory requirements, programming skills and knowledge h...ine as a freely available web server with...
2767 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX...l.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST...Cut, expCov, and other flags To Run: perl fastaAllSize mysequences.fa &...2718 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality p...tic genome assembly and annotation can be obtained with...2712 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages. The...2708 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can a...2708 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microb...nables it to locate the translation initiation site with great accuracy (96% of the 5'...: Prodigal's false positive rate compares favorably with...2698 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefor...d pass on information orderly with zero involvement by the manag...is a spin off from MCE::Flow with a touch of MCE::Stream. This...and :getter. REQUIREMENTS Perl 5.8.0 or later. PDL::IO::Stor...tps://github.com/marioroy/mce-perl https://github.com/mario...2665 days ago
- The official documentation of the Perl 6 programming language is now published!...uilt-in subroutines and methods. Perl 6 ProgramsA collection of documents describing how to run the Perl 6 executable program and othe...rl 5 language can be found on the Perl 5 documentation website. Bio...
2662 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequen...ested on version 10.2.4 only) and Microsoft Windows platforms and is written in Perl/Tk.
2648 days ago
