VISTA is a comprehensive suite of programs and databases for comparative analysis of genomic sequences !http://genome.lbl.gov/vista/index.shtml #Genomics #Seq
Use multi-core with Perl programs http://perltricks.com/article/61/2014/1/21/Make-your-code-run-faster-with-Perl-s-secret-turbo-module #Perl #MCE #Speed #Module
A perl script for mapping fasta formated sequences to multiple reference sequences using one of several alignment programs. http://seq.crg.es/download/software/Miro/doc/run_Mapping.html #Perl #Script
Identifying #repeats and #transposable elements in sequenced genomes: how to find your way through the dense forest of programs https://www.nature.com/articles/hdy2009165 #repeats #TEs