PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2897 days ago
2897 days ago
2867 days ago
2862 days ago
Bioinformatics tools and software
...ats in bacterial genomes. QSCORE >Compare two multiple alignments for benchmarking. PALS >Whole-genome alignment. PREFAB >Protein Reference Alignment Database....2854 days ago
AutoDock Vina: an open-source program for doing molecular docking.
...and implemented by Dr. Oleg Trott in the Molecular Graphics Lab at The Scripps Research Institute. It is especially effective for protein-ligand docking. AutoDock 4 is...1415 days ago
GeneValidator - Identify problems with predicted genes
..., please cite us as follows: Dragan M‡, Moghul MI‡, Priyam A, Bustos C & Wurm Y. 2016. GeneValidator: identify problems with protein-coding gene predictions. ...2802 days ago
2802 days ago
Method in Comparative genomics !!
...of rapid genomic change. We present methods for the identification of protein-coding genes based on their p.... We observed the pressure to conserve the reading frame of functional proteins and developed a test for gen...2727 days ago
1944 days ago