Results for "Protein"
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...Ades. The main output is a FASTA file of the (in frame) CDS portion of the sample for each target region, and a separate file with the translated protein sequence. HybPiper also incl...2732 days ago
- ...ist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a w...nalyses. The MEME Suite supports motif-based analysis of DNA, RNA and protein sequences. It provides motif...
2683 days ago
- ...ltaneously BioDownloader has a built-in repository containing the settings for common bioinformatics file-synchronization needs, including the Protein Data Bank (PDB) and National...
2619 days ago
- ...record significant alignments between exons. Currently, we use BLAT to do this all-vs-all comparison with alignments being performed in protein space. Construct a graph wit...
2638 days ago
FSA: Fast Statistical Alignment
...lgorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much a...high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale probl...2638 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA...
2558 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...ed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as othe...2539 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially,&nbs...the usefulness and reliability of these particular protein structures.eQuant is a service for structure quality assessment of single proteins, which utilizes a coarse-gra...2500 days ago
CoreTracker, a codon reassignment tracker
CoreTracker detects evidences of codon reassignment from the protein repertoire of a set of genomes by successively applying different algorithms. It’s a filtering approach that...2495 days ago
I-PV: Interactive Protein Sequence Visualization
I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec2491 days ago
