List of In-silico Binding Site Prediction Tools
...lly identify binding sites of proteins. In addition to the geometri...from the 9,708 non-redundant protein entries in the PDB database....redicting functional sites in protein structures are increasingly b...me an Van der Waals volume of proteins using a Monte carlo algorith...3739 days ago
Commercial and public next-gen-seq (NGS) software
...nment (including Smith-Waterman-Gotoh) of DNA/protein against a reference. Authors...rapidly finding near exact matches in DNA or protein databases using a hash table....fragments, indicating the location of a bound protein of interest. Original algorit...3514 days ago
Apps for Busy Bioinformatics Researchers !!!
...d About: mentha - the interactome browser, is a project that offers protein-protein physical/enzymatic interactio...re detailed information such as Gene Ontology, mutant phenotype, and protein and genetic interaction data....3537 days ago
Software packages for next gen sequence analysis
...nment (including Smith-Waterman-Gotoh) of DNA/protein against a reference. Authors...rapidly finding near exact matches in DNA or protein databases using a hash table....fragments, indicating the location of a bound protein of interest. Original algorit...3238 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundament...rediction of interaction sites on protein surface and tools for predict...cation of pockets and cavities in proteins structure, and quantitation...sed technique for the analysis of protein pockets. PocketPicker availab...2198 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...These somatic mutations can be annotated with predicted transcript and protein effects using third party too...typing; Web application; predicts impact of amino acid substitution on protein; Calculates Bayes posterior p...2904 days ago
Genome Assembly Tools and Software - PART1 !!
...vel method for targeting assembly of specific protein-coding genes using a graph structure combining both de Bruijn graphs and protein HMMs. The inclusion of HMM in...the assembled contigs to the query reference protein. GRASP achieves much higher s...2681 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...ementary DNA; DNA that is synthesized, by reverse transcriptase, from a Messenger RNA template ( Messenger RNA contains the coded information for protein synthesis). character -- Her...2457 days ago
Tools for bacterial whole genome annotation
...Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as othe...and to create genome databases. It identifies repeats, aligns ESTs and proteins to a genome, produces ab-ini...2327 days ago
List of visualization tools for network biology
...com/site/medusa3visualization/ NAViGaTOR Visualizing and analyzing protein-protein interaction networks http://...http://hub.iis.sinica.edu.tw/Hubba NetworkBLAST Analysis of protein interaction networks across s...2284 days ago