Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in pl...t [equally relevant to animal and microbial systems] Sense from sequ...construction and experimental design Statistical design and analysis of RNA sequen...h to detect multiple modes of protein–DNA binding from genom...3795 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified f...ils a data management system designed to support researchers in drug discovery BioRuby http://b...ware for determining tertiary protein structure given assigned Residual Di...3772 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Fram...ssc/index.htmlBEERS BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithms that aim to reconst...e/software/bottlesim.htmlCASS Protein Sequence Simulation http://www....3753 days ago
List of In-silico Binding Site Prediction Tools
...rce for locating, delineating and measuring concave surface regions on three-dimensional structures of proteins. These include pockets located on protein surfaces and voids buried in the interior of p...sed to study surface features and functional regions of proteins. CASTp includes a graphical...3760 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD...detection, CHiP-seq, browser and other features. Commercial. Windows,...ack to the reference genomes, and...ating the location of a bound protein of interest. Original algori...3535 days ago
3512 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing files - ab1. It includes handy tools such as "Reverse Complemen...ser, is a project that offers protein-protein physical/enzymatic intera...SNP database of effects, with pred...3557 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad...oratory Animal Science Food and Drug Toxicology Research Centre...(W. B.) · Central Inland Capture Fisheries Research Ins...te Lucknow Central Drug Research Institute CIMAP -...2586 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD...detection, CHiP-seq, browser and other features. Commercial. Windows,...ap layout paradigm. By D. Hernandez, P. François, L. Farine...3258 days ago
Binding Site Prediction in Protein !
...lude tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the intermolecular complex...tic Identification of pockets and cavities in proteins structure, and quantitation of th...The server utilizes protein-structure pred...2218 days ago