Results for "Protein sequence/structure annotation"
Bookmarks
Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data struc...3022 days ago
- This is a collection of libraries and high-quality en...lysis, including working with gene annotation, collecting data scores from...interface to multiple common gene annotation formats and the collection of...cripts for setting up databases of annotation, collecting annotated feature...
3012 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that...e alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both protein-coding and...these projects. The consistency of the annotation across species and the focus...3003 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DN...ility of each aligned column. Use sequence quality data properly. Compare DNA to proteins,...
2993 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcr...2979 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2965 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (a...
2965 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragm...2965 days ago
- Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per seq...
2956 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is importa...ductor General Tips for Data Analysis Excel workarounds, adding gene annotation, X-Y plots tips, etc....2945 days ago
