Results for "Protein sequence/structure annotation"
Top-level pages
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academ...plot-using-bedtools-and-r/ Eval: A software package for analysis of genome annotations | BMC Bioinformatics | Full...2256 days ago
- IUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.........V.................A or C or G N.................any base . or -............gap Protein:...
2259 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt To get average for a column of numbers (here the s...
2231 days ago
Tools to Predict the Impact of Missense Variants !
...2, MutationAssessor, Combined Annotation Dependent Depletion, LRT,...ferent variants from the same protein occurring both in the dataset...r tolerance scores to SNVs in proteins, related proteins, or domains t...athogenic variantsh Combined Annotation Dependent Depletion (CADD)&ld...2217 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial...raction partners of a specific protein and the amino acid residues p...given PPI. Information about a protein’s interaction partners...nly used to PPIs predictions: Protein-Protein In...olvation energy values PINUP Protein bi...2216 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is...ools to predict the structure of protein–protein complexes: 3D-...sp; Global rigid search: FFT. smooth protein surface re...he proper treatment of flexibility in protein&nd...2216 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source, flexible, powe...it easy to manipulate strings of characters (for example, strings of DNA bases and protein am...2197 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as a...of the corresponding ancestral protein. The idea of protein 'resurrection' was suggested...bsp;Over the last decade, ancestral protein resurrecti...o the amino acid seaview -> view proteins -...2193 days ago
LINKS scaffolder bloomfilter setting !
➜ bin git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 4096 Jun 15 12:15 lib -rwxrwxrwx 1 urbe urbe 65141 Jun 15 17:13 LINKS ➜ bin git:(master) ✗ pwd /home/ur...2165 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -ou...2153 days ago
