2479 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-lin...2361 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...ndows Vista 32bit, Windows 2008 Server, Windows 7 32bit and 64bit, Ubuntu 10.04 64bit, Ubuntu 10.10 64bit, and gentoo AMD64. The corresponding publication can be found here: B. Voss*,...2352 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...nce set. Sequences not classified in this manner are subjected to a series of downstream classification steps. This work has been accepted for publication: MacDonald NJ, Parks DH, and...2348 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...dolo and the TREEP team of the LBBE: http://lbbe.univ-lyon1.fr/-Equipe-Elements-transposables-.html?lang=en You can find the original publication in GBE here: https://aca...2342 days ago
2335 days ago
AliTV—interactive visualization of whole genome comparisons
..., web-browser based and highly customizable interface allows rapid exploration and manipulation of the visualized data as well as the export of publication-ready high-quality figures. A...2304 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
.... The program package, including source codes, executables, and this documentation, is distributed free of charge. If you use this program in a publication, please cite the following re...2180 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...n the code, you will need Python 2.7, BOOST libraries and Networkx(version lower than 1.2). If you consider using this tool, please cite our publication which describes the methods u...2148 days ago
LSC :a long read error correction tool
...orial to see how LSC works on some example data. Read the manual if anything is unclear. You're ready, Happy LSCing! Latest publication Kin Fai Au, Jason Underwood,...2100 days ago