BioGPS: Spotlight on the Gene Expression Atlas
BioGPS opened 2016 with a publication in Nucleic Acids Research, right after the New Year holiday. Throughout the year, new designs for the site were being created, reviewed, adjusted...2022 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
...generated by the first run of Synima – and can be subsequently edited. Synima runs quickly on a command line to generate informative and publication quality figures. Synima is op...2010 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast...1967 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
...d tetraploids, on the basis of frequency distributions at variant sites where only two bases are segregating. For more background see also the publication at BMC Bioinformatics....1918 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
...t-generation sequencing reads/contigs against a reference coding sequence. For further details about the underlying algorithm see the original publication:MACSE: Multiple Alignment of...1900 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...et an annotation to a specific state, choosing from the ‘History’ display. Adding and updating PubMed IDs will prompt users with a publication title to confirm their submis...1797 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...sp;a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requi.... Users also have option to download the generated visualizations in publication ready SVG or PNG formats.1432 days ago
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GToTree: a user-friendly workflow for phylogenomics
GToTree is a user-friendly workflow for phylogenomics intended to give more researchers the capability to create phylogenomic trees. The open-access Bioinformatics Journal publication is available here, and documentation and examples can be found at the wiki here.798 days ago
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